PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g030910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 399aa    MW: 43333.7 Da    PI: 6.7668
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g030910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.51.4e-3528153289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec....eaessss 80 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++          s   a ++    e+e+ ++
  Sopen07g030910.1  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtaS---AAAAninlEQEQAQK 117
                       79**************************************************************88888775321...212223222222222 PP

               TCP  81 sasnsssg.............................k 89 
                       +++   ++                              
  Sopen07g030910.1 118 QQE--DNNfafqqgnvslfdnvagpsskramesntasF 153
                       222..222345555566665544444444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3228234IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT ASAAAANINL EQEQAQKQQE  120
DNNFAFQQGN VSLFDNVAGP SSKRAMESNT ASFLPPSLES DAIADTIKSF FPMGSSTSAN  180
SSAMQFHSFQ EPHMLSRANS QNQDLSLSLQ FQDPIMLHHQ NQQTQHHNQT NHREQEQVQV  240
QAPAHFGGNT PHGFDTSGWS MHQRLGSWSD SREIGPGGSG GAVTGPGGYL FNSPPAPALL  300
QQLFGQNQFF SQRGPLQSSN TSSVRAWIDP SAIAIASGDP SNHHQAALPM YPSTIPGYGF  360
ASEVGGFSGF RIPARIQGEE EEHDGISDKP SSASSDSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082617.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-100TCP4_ARATH; Transcription factor TCP4
TrEMBLM1AX460.0M1AX46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-89TCP family protein